Saludos
puedes usar la sentencia de manipulación de datos
LOAD DATA INFILE
Código:
LOAD DATA [LOW_PRIORITY | CONCURRENT] [LOCAL] INFILE 'file_name.txt'
[REPLACE | IGNORE]
INTO TABLE tbl_name
[FIELDS
[TERMINATED BY 'string']
[[OPTIONALLY] ENCLOSED BY 'char']
[ESCAPED BY 'char' ]
]
[LINES
[STARTING BY 'string']
[TERMINATED BY 'string']
]
[IGNORE number LINES]
[(col_name_or_user_var,...)]
[SET col_name = expr,...)]
http://dev.mysql.com/doc/refman/5.0/es/load-data.html